Non-Coding RNA Search

Ss1.1-rlnt12c_p12.5

Sequence:


               
               CTGATTCGCAAGCTTCCCTTCCAGCGTCGGGTGCGGGAAATGGCTCAGGACTTCAAAACA
GATCTGCGCTTCCAGAGTGCAGCTATGGGTGCTTGGCAGGAGGCAAGTGAGGCCTATCTG
GTGGGCCTTTTTGAAGACACCAACCTGTGTGCTATCCATGCCAAACGTGTAACAATTATG
CCAAAAGACATCCAGCTAGCACGCCGCATACGTGGAGAACGTGCTTAAGAATCCACTATG
ATGGGAAACATTTCATTCTTTAAAAAAAAAAAAAATTCTCTTCTTCCGGTTATGGGTAGT
TCTGAACGTTAGATATTTTTTTTCCAGGGGGTCAAAAGGTACCTAAGTATATGATGGCAA
GTGGAAAAATAGGGGACAGAAATCAGGTATGGGCAGTTTTTCCATTTTCATTGGTGTGTG
AATTTTTAATATAAATGCGGGGACATAAAGCATTAATGCAAGTCAAAAGGTTTCAGTGAA
CAAGTTTCAGCAGTTCAACTTTATAACAATTATAAATAAACCTGTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGATTCGCAAGCTTCCCTTCCAGCGTCGGGTGCGGGAAATGGCTCAGGACTTCAAAACA
GATCTGCGCTTCCAGAGTGCAGCTATGGGTGCTTGGCAGGAGGCAAGTGAGGCCTATCTG
GTGGGCCTTTTTGAAGACACCAACCTGTGTGCTATCCATGCCAAACGTGTAACAATTATG
CCAAAAGACATCCAGCTAGCACGCCGCATACGTGGAGAACGTGCTTAAGAATCCACTATG
ATGGGAAACATTTCATTCTTTAAAAAAAAAAAAAATTCTCTTCTTCCGGTTATGGGTAGT
TCTGAACGTTAGATATTTTTTTTCCAGGGGGTCAAAAGGTACCTAAGTATATGATGGCAA
GTGGAAAAATAGGGGACAGAAATCAGGTATGGGCAGTTTTTCCATTTTCATTGGTGTGTG
AATTTTTAATATAAATGCGGGGACATAAAGCATTAATGCAAGTCAAAAGGTTTCAGTGAA
CAAGTTTCAGCAGTTCAACTTTATAACAATTATAAATAAACCTGTTAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61882799|ref|XP_584838.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61882799|ref|XP_584838.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-159, + strand, RNAz p=0.56565

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, + strand, RNAz p=0.56565

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-528, gnl|bosTau2|chr11 (1692576-1692050)
               

               
               1-528, gnl|Hg17|chr2 (175410326-175410855)
               

               
               1-528, gnl|Mm7|chr16 (91164317-91163792)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-528, gnl|bosTau2|chr11 (1692576-1692050)
               

               
               1-528, gnl|Hg17|chr2 (175410326-175410855)
               

               
               1-528, gnl|Mm7|chr16 (91164317-91163792)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               lnt (0.284616)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.284616)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

	1-528, gnl\|bosTau2\|chr11 (1692576-1692050)
	1-528, gnl\|Hg17\|chr2 (175410326-175410855)
	1-528, gnl\|Mm7\|chr16 (91164317-91163792)