Non-Coding RNA Search

Ss1.1-rmas924b_k4.5

Sequence:


               
               GTACAATATAAGACTATGACTATTTGTGGTCATACATATAATGAGTAATGTGATAATGAA
TGTGATAAATGCATAAATATATTAAAAAATTAAAATATATTATTTAATGGATGCCTCCTT
ATATATTTAAAAGTAACCCACATAAAGATTCAGTTAAATGGAGCTACCTAAAATGTAAGG
TAGCTTTATCTTCCTATCTTTGTATTCAAAGTTCTGTTACTATTTGAGGAGAAAAAGTAA
AAGGATCAGTAGGATCCACTTTCAGAGGAATTATATGTAGAATCGTATTCACTTGCCAGT
GGCCCATGAAAAACTTACTTCAGAACTATTTTCAAAAACAGGTAATGGATTTTTAACTAT
TATTTTAAATAAACACTTTAAAAAAATCTCTCCTTAGGTTTCAAAAATGCCTCAATTTAT
TGTTGCTTTTCACCTAAAAAAACATACTTCAAACTATGAACTGTATTTCTCTATGACACC
AATCAGGTAATACCTATAGGTACACAAAGTTCATTTATAAATTAAGATTCTACAAACAGG
ATTTAGAATGATGTTAAAAGTGACAGGCTTATTTAAGTTTAAGATAAGACAGCTTCAATC
ATCTGTCAATGGACATTTGGGTTGTTTCTATGTCTTGGCTATTGTGAATAGTGCTGCAGT
GAACACGCAATATACAGCACAAATGAACCTTTCCACAGAAAAGAAAATCATGGACTTGGA
GAATAGACTTGTGGTTGCCAAGAGGGAGGAGGAGGGAGTGGGATAGATGGTGCTTGGGAT
TAACAGATGCCTTTGGAATAGATTAGCAATGAGATCCTGCTGTGTAGCACTGGGAACTAT
GTCTGGTCACTTATGATGGAGCATGATGATGTGAGAAAAAAAGTATACATGTATGTGTAA
CTGGGTCACCATGCTGTACAGTAGAAAATTGACAGAACACTGTAAACCAGCTATGATGGA
AAAAAATAAAAATCATTATATAAAAAAAAAAGACAGCTTCTTACAGAAGCAGTTGTTCCC
ATAATTAAACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTACAATATAAGACTATGACTATTTGTGGTCATACATATAATGAGTAATGTGATAATGAA
TGTGATAAATGCATAAATATATTAAAAAATTAAAATATATTATTTAATGGATGCCTCCTT
ATATATTTAAAAGTAACCCACATAAAGATTCAGTTAAATGGAGCTACCTAAAATGTAAGG
TAGCTTTATCTTCCTATCTTTGTATTCAAAGTTCTGTTACTATTTGAGGAGAAAAAGTAA
AAGGATCAGTAGGATCCACTTTCAGAGGAATTATATGTAGAATCGTATTCACTTGCCAGT
GGCCCATGAAAAACTTACTTCAGAACTATTTTCAAAAACAGGTAATGGATTTTTAACTAT
TATTTTAAATAAACACTTTAAAAAAATCTCTCCTTAGGTTTCAAAAATGCCTCAATTTAT
TGTTGCTTTTCACCTAAAAAAACATACTTCAAACTATGAACTGTATTTCTCTATGACACC
AATCAGGTAATACCTATAGGTACACAAAGTTCATTTATAAATTAAGATTCTACAAACAGG
ATTTAGAATGATGTTAAAAGTGACAGGCTTATTTAAGTTTAAGATAAGACAGCTTCAATC
ATCTGTCAATGGACATTTGGGTTGTTTCTATGTCTTGGCTATTGTGAATAGTGCTGCAGT
GAACACGCAATATACAGCACAAATGAACCTTTCCACAGAAAAGAAAATCATGGACTTGGA
GAATAGACTTGTGGTTGCCAAGAGGGAGGAGGAGGGAGTGGGATAGATGGTGCTTGGGAT
TAACAGATGCCTTTGGAATAGATTAGCAATGAGATCCTGCTGTGTAGCACTGGGAACTAT
GTCTGGTCACTTATGATGGAGCATGATGATGTGAGAAAAAAAGTATACATGTATGTGTAA
CTGGGTCACCATGCTGTACAGTAGAAAATTGACAGAACACTGTAAACCAGCTATGATGGA
AAAAAATAAAAATCATTATATAAAAAAAAAAGACAGCTTCTTACAGAAGCAGTTGTTCCC
ATAATTAAACTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               90-208, - strand, RNAz p=0.510823

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               90-208, - strand, RNAz p=0.510823

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               116-233, + strand, RNAmicro p=0.920957

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               116-233, + strand, RNAmicro p=0.920957

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               12-592, gnl|bosTau2|chr1 (20039147-20039727)
               

               
               12-592, gnl|Hg17|chr3 (88267850-88267272)
               


               
               669-975, gnl|bosTau2|chr5 (56070764-56071093)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-592, gnl|bosTau2|chr1 (20039147-20039727)
               

               
               12-592, gnl|Hg17|chr3 (88267850-88267272)
               


               
               669-975, gnl|bosTau2|chr5 (56070764-56071093)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mas (0.210305)
               

               
               kid (0.129735)
               

               
               ova (0.129132)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               kid (0.129735)
               

               
               ova (0.129132)

	12-592, gnl\|bosTau2\|chr1 (20039147-20039727)
	12-592, gnl\|Hg17\|chr3 (88267850-88267272)

	669-975, gnl\|bosTau2\|chr5 (56070764-56071093)