Ss1.1-rmcp35c_c12.5
|
TTTCTCCGCCCCGGGGCCCGCTGTAGCCCTTCTTTGTACCCAAATCTCACTCATTTTCTT
CGGATCCGCCATCTGTGGTGGAACCGCCGCCAAGATGCAGATATTCGTGAAGACGCTGAC
GGGCAAGACCATCACTCTCGAGGTCGAACCCTCGGATACAATAGAAAATGTAAAGGCTAA
GATCCAGGATAAGGAAGGGATTCCTCCTGACCAGCAAAGACTGATCTTTGCTGGCAAGCA
ACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCATCT
TGTATTGAGACTTCGTGGTGGTGCTAAGAAAAGGAAGAAGAAGTCTTACACCACTCCCAA
GAAGAACAAGCATAAGAGAAAGAAGGTTAAGCTGGCTGTCCTAAAATACTATAAGGTGGA
TGAGAACGGCAAAATCAGTCGTCTTCGTCGGGAGTGCCCTTCAGATGAATGTGGTGCTGG
AGTTTTTATGGCCAGCCACTTTGACAGACATTATTGTGGCAAATGTTGCCTGACCTATTG
TTTCAACAAACCAGAAGACAAGTAATTGTATATTGGTTAATAAAAGACATGAACTAACAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTTCTCCGCCCCGGGGCCCGCTGTAGCCCTTCTTTGTACCCAAATCTCACTCATTTTCTT
CGGATCCGCCATCTGTGGTGGAACCGCCGCCAAGATGCAGATATTCGTGAAGACGCTGAC
GGGCAAGACCATCACTCTCGAGGTCGAACCCTCGGATACAATAGAAAATGTAAAGGCTAA
GATCCAGGATAAGGAAGGGATTCCTCCTGACCAGCAAAGACTGATCTTTGCTGGCAAGCA
ACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCATCT
TGTATTGAGACTTCGTGGTGGTGCTAAGAAAAGGAAGAAGAAGTCTTACACCACTCCCAA
GAAGAACAAGCATAAGAGAAAGAAGGTTAAGCTGGCTGTCCTAAAATACTATAAGGTGGA
TGAGAACGGCAAAATCAGTCGTCTTCGTCGGGAGTGCCCTTCAGATGAATGTGGTGCTGG
AGTTTTTATGGCCAGCCACTTTGACAGACATTATTGTGGCAAATGTTGCCTGACCTATTG
TTTCAACAAACCAGAAGACAAGTAATTGTATATTGGTTAATAAAAGACATGAACTAACAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
mgp (22.1453) |
|
thg (13.947) |
|
ova (12.5258) |
|
sag (10.232) |
|
rec (10.2111) |
|
aor (10.1543) |
|
hea (8.58896) |
|
csk (8.16327) |
|
sto (7.19295) |
|
mga (6.56841) |
|
cmu (6.33737) |
|
pro (6.14439) |
|
pgl (6.04265) |
|
cbe (5.98086) |
|
mcp (5.9727) |
|
ssp (5.96287) |
|
vin (5.65348) |
|
lyg (5.59031) |
|
eje (5.53469) |
|
sme (4.58155) |
|
med (4.53383) |
|
nca (4.51684) |
|
bla (4.4765) |
|
fty (4.39599) |
|
lnt (4.26925) |
|
cut (4.24809) |
|
nlu (4.21698) |
|
sin (4.02379) |
|
fat (3.98054) |
|
spc (3.9678) |
|
gul (3.72936) |
|
ese (3.66856) |
|
nmm (3.45286) |
|
ecc (3.33602) |
|
isp (3.30827) |
|
mgm (3.24617) |
|
ski (3.22817) |
|
sug (3.05499) |
|
kid (2.85418) |
|
fli (2.84033) |
|
ton (2.808) |
|
eru (2.7611) |
|
ebs (2.72093) |
|
elu (2.6975) |
|
bfe (2.69744) |
|
ill (2.63389) |
|
duo (2.59202) |
|
pty (2.56886) |
|
hlv (2.50661) |
|
amn (2.50627) |
|
nje (2.4888) |
|
ece (2.29305) |
|
nbm (2.28447) |
|
jca (2.2792) |
|
nep (2.2071) |
|
jej (2.17628) |
|
col (2.14509) |
|
pan (2.12364) |
|
nco (2.10254) |
|
eep (2.08359) |
|
eye (2.04604) |
|
fce (1.90114) |
|
mas (1.89274) |
|
fcc (1.78006) |
|
cga (1.67457) |
|
csp (1.61186) |
|
eli (1.36633) |
|
hyp (1.28553) |
|
nms (1.28315) |
|
fco (1.25766) |
|
cte (1.17096) |
|
che (1.09051) |
|
cli (1.06968) |
|
cag (1.05836) |
|
fhi (1.01747) |
|
cly (0.965135) |
|
ute (0.929491) |
|
liv (0.877706) |
|
fbs (0.876732) |
|
cov (0.792917) |
|
spl (0.715922) |
|
cst (0.700182) |
|
clu (0.598229) |
|
ret (0.514933) |
|
cki (0.495704) |
|
lin (0.436808) |
|
cje (0.330469) |
|
tbr (0.308356) |
|
ste (0.270416) |
|
pla (0.267344) |
|
tes (0.207814) |
|
ldo (0.194005) |
|
lun (0.150489) |
|
tra (0.123092) |
|
mgp (22.1453) |
|
thg (13.947) |
|
ova (12.5258) |
|
sag (10.232) |
|
rec (10.2111) |
|
aor (10.1543) |
|
hea (8.58896) |
|
csk (8.16327) |
|
sto (7.19295) |
|
mga (6.56841) |
|
cmu (6.33737) |
|
pro (6.14439) |
|
pgl (6.04265) |
|
cbe (5.98086) |
|
mcp (5.9727) |
|
ssp (5.96287) |
|
vin (5.65348) |
|
lyg (5.59031) |
|
eje (5.53469) |
|
sme (4.58155) |
|
med (4.53383) |
|
nca (4.51684) |
|
bla (4.4765) |
|
fty (4.39599) |
|
lnt (4.26925) |
|
cut (4.24809) |
|
nlu (4.21698) |
|
sin (4.02379) |
|
fat (3.98054) |
|
spc (3.9678) |
|
gul (3.72936) |
|
ese (3.66856) |
|
nmm (3.45286) |
|
ecc (3.33602) |
|
isp (3.30827) |
|
mgm (3.24617) |
|
ski (3.22817) |
|
sug (3.05499) |
|
kid (2.85418) |
|
fli (2.84033) |
|
ton (2.808) |
|
eru (2.7611) |
|
ebs (2.72093) |
|
elu (2.6975) |
|
bfe (2.69744) |
|
ill (2.63389) |
|
duo (2.59202) |
|
pty (2.56886) |
|
hlv (2.50661) |
|
amn (2.50627) |
|
nje (2.4888) |
|
ece (2.29305) |
|
nbm (2.28447) |
|
jca (2.2792) |
|
nep (2.2071) |
|
jej (2.17628) |
|
col (2.14509) |
|
pan (2.12364) |
|
nco (2.10254) |
|
eep (2.08359) |
|
eye (2.04604) |
|
fce (1.90114) |
|
mas (1.89274) |
|
fcc (1.78006) |
|
cga (1.67457) |
|
csp (1.61186) |
|
eli (1.36633) |
|
hyp (1.28553) |
|
nms (1.28315) |
|
fco (1.25766) |
|
cte (1.17096) |
|
che (1.09051) |
|
cli (1.06968) |
|
cag (1.05836) |
|
fhi (1.01747) |
|
cly (0.965135) |
|
ute (0.929491) |
|
liv (0.877706) |
|
fbs (0.876732) |
|
cov (0.792917) |
|
spl (0.715922) |
|
cst (0.700182) |
|
clu (0.598229) |
|
ret (0.514933) |
|
cki (0.495704) |
|
lin (0.436808) |
|
cje (0.330469) |
|
tbr (0.308356) |
|
ste (0.270416) |
|
pla (0.267344) |
|
tes (0.207814) |
|
ldo (0.194005) |
|
lun (0.150489) |
|
tra (0.123092) |
