Non-Coding RNA Search

Ss1.1-rnca20b_c14.5

Sequence:


               
               CGCCCCGCCCCCCAGTGGCCGGGGTGCTGGAGGTGCTCCGTCGCGACCCTCTGTACCCCG
GCGAACATGGCGCTGCGAGCGGCTCGGACTCTGCGGGCTGCAGTCTCCAACCTACGCGCC
GTCTCTGCACCCGCAGCGCCCTGCCTGCCGCGGCCTTGGGGGCTGCAGGCGGGCGCCATC
CGGTTGCTGCGCACCAGCCCTGCTCTGCTCTCGGTGCGAAAATTCACAGACAAACATGAA
TGGATAACAACAGAAAACGGCATTGGAACAGTAGGAATCAGCAATTTTGCACAGGAAGCT
TTGGGAGATGTTGTTTACTGTAGTCTGCCCGAAGTTGGGACAAAATTGAACAAACAAGAA
GAGTTCGGTGCTTTGGAAAGTGTGAAAGCTGCTAGTGAACTCTATTCTCCTCTATCAGGA
GAAGTAACTGCAATTAATGAAGCTCTAGCAGAAAATCCAGGACTTGTCAACAAATCTTGT
TATGAAGATGGTTGGCTGATCAAGATGACACTCAGTAACCCTTCAGAACTGGATGAACTA
ATGAGTGAAGAAGCATATGAGAAATACATAAAATCTATTGAGGAGTGAAAGTGGAACCCC
TAAATAAACTAGTTTGAAACAACTTAAAAAAAAAAAGTTGTCTTAAATTAGTGGTGGATA
GATTTTTAAAAAGCAACTTTTAGCAAAAGAAACTACTTACAACAATGTTACCAGAAAAAA
ATACCCCTTAACTTCCTAATAACTTCAAATAAACACTATGCATCTTTTGCACAGCACTCT
GATTTTTAGACTAGGCTCCAGTTAGAATATTCAGAATTCTTGAAATTATCTTTGGTAAAA
CTACTTAGAAAATTACATAATTCAAGGATAACACTGTTCCCTTAAGCCTTATATATATAT
AATATTGTAACTTGCTTGCCGCCCCTGGATTTGGGTCAAAGTACTTAACTTTCCACTGGA
AATAACTGGCTTTGGAGAAAAATTTTTGTTAGTTGTACAGTGTCAATGAAGAACATTACT
ATCTTAATTTCGTAATATATTGTGTTTGCTGGTGCTATTTTTATACAGTGAAGCAACAGT
CTTGCAGAAAAATAAGGAAACGTTTAATAAAATATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCCCGCCCCCCAGTGGCCGGGGTGCTGGAGGTGCTCCGTCGCGACCCTCTGTACCCCG
GCGAACATGGCGCTGCGAGCGGCTCGGACTCTGCGGGCTGCAGTCTCCAACCTACGCGCC
GTCTCTGCACCCGCAGCGCCCTGCCTGCCGCGGCCTTGGGGGCTGCAGGCGGGCGCCATC
CGGTTGCTGCGCACCAGCCCTGCTCTGCTCTCGGTGCGAAAATTCACAGACAAACATGAA
TGGATAACAACAGAAAACGGCATTGGAACAGTAGGAATCAGCAATTTTGCACAGGAAGCT
TTGGGAGATGTTGTTTACTGTAGTCTGCCCGAAGTTGGGACAAAATTGAACAAACAAGAA
GAGTTCGGTGCTTTGGAAAGTGTGAAAGCTGCTAGTGAACTCTATTCTCCTCTATCAGGA
GAAGTAACTGCAATTAATGAAGCTCTAGCAGAAAATCCAGGACTTGTCAACAAATCTTGT
TATGAAGATGGTTGGCTGATCAAGATGACACTCAGTAACCCTTCAGAACTGGATGAACTA
ATGAGTGAAGAAGCATATGAGAAATACATAAAATCTATTGAGGAGTGAAAGTGGAACCCC
TAAATAAACTAGTTTGAAACAACTTAAAAAAAAAAAGTTGTCTTAAATTAGTGGTGGATA
GATTTTTAAAAAGCAACTTTTAGCAAAAGAAACTACTTACAACAATGTTACCAGAAAAAA
ATACCCCTTAACTTCCTAATAACTTCAAATAAACACTATGCATCTTTTGCACAGCACTCT
GATTTTTAGACTAGGCTCCAGTTAGAATATTCAGAATTCTTGAAATTATCTTTGGTAAAA
CTACTTAGAAAATTACATAATTCAAGGATAACACTGTTCCCTTAAGCCTTATATATATAT
AATATTGTAACTTGCTTGCCGCCCCTGGATTTGGGTCAAAGTACTTAACTTTCCACTGGA
AATAACTGGCTTTGGAGAAAAATTTTTGTTAGTTGTACAGTGTCAATGAAGAACATTACT
ATCTTAATTTCGTAATATATTGTGTTTGCTGGTGCTATTTTTATACAGTGAAGCAACAGT
CTTGCAGAAAAATAAGGAAACGTTTAATAAAATATT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|45386061|gb|AAS59848.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|45386061|gb|AAS59848.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               333-912, - strand, RNAz p=0.947941
               

               
               353-472, - strand, RNAz p=0.587834

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               333-912, - strand, RNAz p=0.947941
               

               
               353-472, - strand, RNAz p=0.587834

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-1116, gnl|bosTau2|chr11 (76537196-76538292)
               

               
               1-1116, gnl|Hg17|chr1 (164757380-164756265)
               

               
               1-1116, gnl|Mm7|chr9 (107889853-107891052)
               


               
               61-632, gnl|bosTau2|chr10 (13368561-13369132)
               

               
               61-632, gnl|Hg17|chr1 (164757324-164756758)
               

               
               61-632, gnl|Mm7|chr9 (107889856-107890394)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1116, gnl|bosTau2|chr11 (76537196-76538292)
               

               
               1-1116, gnl|Hg17|chr1 (164757380-164756265)
               

               
               1-1116, gnl|Mm7|chr9 (107889853-107891052)
               


               
               61-632, gnl|bosTau2|chr10 (13368561-13369132)
               

               
               61-632, gnl|Hg17|chr1 (164757324-164756758)
               

               
               61-632, gnl|Mm7|chr9 (107889856-107890394)

Expressed library(ies): 39 entry(ies)

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Expressed library(ies): 39 entry(ies)

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               sme (0.610874)
               

               
               rec (0.519211)
               

               
               csk (0.422238)
               

               
               hlv (0.417769)
               

               
               hea (0.408998)
               

               
               ssp (0.406559)
               

               
               cmu (0.372787)
               

               
               mgm (0.360685)
               

               
               cki (0.330469)
               

               
               fat (0.294855)
               

               
               ski (0.29347)
               

               
               che (0.272628)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 39 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.610874)
               

               
               rec (0.519211)
               

               
               csk (0.422238)
               

               
               hlv (0.417769)
               

               
               hea (0.408998)
               

               
               ssp (0.406559)
               

               
               cmu (0.372787)
               

               
               mgm (0.360685)
               

               
               cki (0.330469)
               

               
               fat (0.294855)
               

               
               ski (0.29347)
               

               
               che (0.272628)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	333-912, - strand, RNAz p=0.947941
	353-472, - strand, RNAz p=0.587834

	1-1116, gnl\|bosTau2\|chr11 (76537196-76538292)
	1-1116, gnl\|Hg17\|chr1 (164757380-164756265)
	1-1116, gnl\|Mm7\|chr9 (107889853-107891052)

	61-632, gnl\|bosTau2\|chr10 (13368561-13369132)
	61-632, gnl\|Hg17\|chr1 (164757324-164756758)
	61-632, gnl\|Mm7\|chr9 (107889856-107890394)

	sme (0.610874)
	rec (0.519211)
	csk (0.422238)
	hlv (0.417769)
	hea (0.408998)
	ssp (0.406559)
	cmu (0.372787)
	mgm (0.360685)
	cki (0.330469)
	fat (0.294855)
	ski (0.29347)
	che (0.272628)
	pgl (0.236967)
	mgp (0.230681)
	aor (0.195274)
	sag (0.182715)
	sto (0.179824)
	gul (0.177588)
	fty (0.17584)
	fbs (0.175346)
	fhi (0.169578)
	fco (0.157208)
	tbr (0.154178)
	cli (0.152812)
	lun (0.150489)
	isp (0.150376)
	cst (0.140036)
	nca (0.136874)
	ste (0.135208)
	ret (0.128733)
	sug (0.127291)
	ese (0.126502)
	bla (0.124347)
	tra (0.123092)
	eep (0.122564)
	ebs (0.118301)
	spc (0.113366)
	cty (0.10408)
	eje (0.0988338)