Non-Coding RNA Search

Ss1.1-rpgl03_o16.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAGAGAAC
AAATGCACTTTTATTTAATTTTCAGTAAGTTTAAATTCTTGAAGGGTACAGCATCACACG
GATTCTGTGTCCAATGGCCTTGGCAGGAAGGTTGCTTCGGAATTTGGCACGAACCACAGA
CACACCTAAGGAAAAGAAAGTTAAAGGGCTCCTCCCTCAGGGAAGGCCAGGAGGACAGAG
CCAGGCATTTAGGAACTAGAGGCTAGTTCTCAGTCTTCAGGCCTGTTTTCTGCTTTGGGA
CAGAGAGGCTTCTTGCTATAGTTTCCCCATCCTGCTGACTCATGGCTCCAATCCCCCTGC
TGGCACTACTGGGGCAGATAAGCCCCTGCCTGTCCTCAGGGAGGACCCCGGCCCCACACT
CCCCTCAGCTGTATCAGTTTCCCTTCGGCTTTGCCTTTGCTTCTAGCCCTGGTCCCATGT
CCAGCTCTGTGAATTAGAACCTGTGTGGATTTCAAGCTAGCAGCTCAGAAATCTGGTTTC
TCCTGGAAGGAGTATGCCAGTCTGTGGCCCAGGTGCTGGCACCCCAAGAGACTTTGCCCT
GTTCCTGCCAGCTTAGCCCAGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAGAGAAC
AAATGCACTTTTATTTAATTTTCAGTAAGTTTAAATTCTTGAAGGGTACAGCATCACACG
GATTCTGTGTCCAATGGCCTTGGCAGGAAGGTTGCTTCGGAATTTGGCACGAACCACAGA
CACACCTAAGGAAAAGAAAGTTAAAGGGCTCCTCCCTCAGGGAAGGCCAGGAGGACAGAG
CCAGGCATTTAGGAACTAGAGGCTAGTTCTCAGTCTTCAGGCCTGTTTTCTGCTTTGGGA
CAGAGAGGCTTCTTGCTATAGTTTCCCCATCCTGCTGACTCATGGCTCCAATCCCCCTGC
TGGCACTACTGGGGCAGATAAGCCCCTGCCTGTCCTCAGGGAGGACCCCGGCCCCACACT
CCCCTCAGCTGTATCAGTTTCCCTTCGGCTTTGCCTTTGCTTCTAGCCCTGGTCCCATGT
CCAGCTCTGTGAATTAGAACCTGTGTGGATTTCAAGCTAGCAGCTCAGAAATCTGGTTTC
TCCTGGAAGGAGTATGCCAGTCTGTGGCCCAGGTGCTGGCACCCCAAGAGACTTTGCCCT
GTTCCTGCCAGCTTAGCCCAGGCC

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               28-176, gnl|bosTau2|chr13 (43931384-43931235)
               

               
               28-176, gnl|Hg17|chr8 (122461488-122461643)
               

               
               28-176, gnl|Mm7|chr17 (27330770-27330914)
               


               
               197-624, gnl|bosTau2|chr7 (17314752-17315194)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-176, gnl|bosTau2|chr13 (43931384-43931235)
               

               
               28-176, gnl|Hg17|chr8 (122461488-122461643)
               

               
               28-176, gnl|Mm7|chr17 (27330770-27330914)
               


               
               197-624, gnl|bosTau2|chr7 (17314752-17315194)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               cli (0.152812)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.152812)
               

               
               pgl (0.118483)

	28-176, gnl\|bosTau2\|chr13 (43931384-43931235)
	28-176, gnl\|Hg17\|chr8 (122461488-122461643)
	28-176, gnl\|Mm7\|chr17 (27330770-27330914)

	197-624, gnl\|bosTau2\|chr7 (17314752-17315194)