Ss1.1-rptbr0103_g24.5
|
GTCCGGCGCAGAGCCGCGGGTGCGGCGGCCGGGAGTCGGGATAGGAGTAGTGGTGACCAG
CTGCAGGCATCCTCGCTGCGTCCTCCTGGGGAAGAGGAAAGGGTCGTTTGGAGCCGGCAG
TTTCCAACTTCCCGGGGGCCACTTGGAGTTCGGTGAAAGCTGGGAAGAATGCGCTCAAAG
GGAAACCCTGGAAGAAGCAGCTCTTCACCTGAAAAATGTTCGCTTTGCCTCGGTTGTGAA
TTCTTTCATTGAGGGAGAGAACTACCATTATGTCACCGTATTGATGAAAGGAGAGGTGGA
CACCACTCATGATTCAGAGCCAAAGAATGTGGAGCCTGAAAAAAACGAAAGTTGGGAGTG
GGTTCCTTGGGAAGATTTTCCTCCCCTGGACCAGCTTTTCTGGGGACTACGTTGTTTAAA
GGAACAAGGCTACGATCCATTTAAAGAAGATTTGGATCATCTGGTAGGATACAAAGGCAA
TCACCTAGAGGTGAACAAGAAGATTCCTTAATTTTTTTTTTTTCTCATAAAAGGCAAAAT
AAGGTCCTGCTAGGAATGAAAAACATCTACATTTAAGAATAACTTCATTTTATTTAAAAA
GCCCCATATGAGTATCTGTTGAGTTGCAATCTCTTAATAGACCCAGCACCCTTTCAGCCA
GTACTTGTGAACAATTTTCAGGGATTGTGTCATGACTTGTATTTCAGACTCAAAAAAAAT
GTGATAAACGGTGATACTGTGGTGATTCTGCTTTCCGTATTTCTCTTTGATGTTAACCCT
GCTGTTTGTATTACCAGCGTGCATGGAGGAGAGTTCAGTAGAGCTAGGTGTTTCAGTTCA
AATACTAACACAGCATTGCCATTCCAGAATTTACCACGTGTGTTGATTTTCCTCTTGTTT
TATTTAAAATAAAAATGTTTGGGTATTACCTTGTGACAGTCCCTGCAAACAGGACAAGCC
ATTAGGGTGTATTTCCCAGATTTCCACTTGAGAACCCAAACTAAGGGAAGTGAGATAAAC
GGTCCAGGATCTGCATCCCATCATTAACAGCCATTTTTGATTTTTCTCTCAATCCCTGTG
AGATCCAGCTTCCTTATGTGTAAAATGTGATCAGACTAGGGCAGTGGTTCTCAGAGTGCA
TCCCTGGGGAGTGCTTGAGACCCTTTCAGGGGCTTTCAGGAATAAAGCTATTTTGTCTTA
AGATGACATCATTTGCCTTTTTCATTCTCATTCTTTCCCGAGTGTACAGAGGAGTTTTCC
TGAGGCTGTGTATTGTATGATACTGTAACAGACGGAACACAAAAGCAGAGAGCAGAGAAT
CTAGCTCTCTTCCGTTAAGCTAGACCTGAAAGAAATCTACAAAAATGCAAAACAGTGCCA
CTCTTCTCCCTTTTTTTAAGAAAAATAGCTATTTTTATAAAACTTATG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTCCGGCGCAGAGCCGCGGGTGCGGCGGCCGGGAGTCGGGATAGGAGTAGTGGTGACCAG
CTGCAGGCATCCTCGCTGCGTCCTCCTGGGGAAGAGGAAAGGGTCGTTTGGAGCCGGCAG
TTTCCAACTTCCCGGGGGCCACTTGGAGTTCGGTGAAAGCTGGGAAGAATGCGCTCAAAG
GGAAACCCTGGAAGAAGCAGCTCTTCACCTGAAAAATGTTCGCTTTGCCTCGGTTGTGAA
TTCTTTCATTGAGGGAGAGAACTACCATTATGTCACCGTATTGATGAAAGGAGAGGTGGA
CACCACTCATGATTCAGAGCCAAAGAATGTGGAGCCTGAAAAAAACGAAAGTTGGGAGTG
GGTTCCTTGGGAAGATTTTCCTCCCCTGGACCAGCTTTTCTGGGGACTACGTTGTTTAAA
GGAACAAGGCTACGATCCATTTAAAGAAGATTTGGATCATCTGGTAGGATACAAAGGCAA
TCACCTAGAGGTGAACAAGAAGATTCCTTAATTTTTTTTTTTTCTCATAAAAGGCAAAAT
AAGGTCCTGCTAGGAATGAAAAACATCTACATTTAAGAATAACTTCATTTTATTTAAAAA
GCCCCATATGAGTATCTGTTGAGTTGCAATCTCTTAATAGACCCAGCACCCTTTCAGCCA
GTACTTGTGAACAATTTTCAGGGATTGTGTCATGACTTGTATTTCAGACTCAAAAAAAAT
GTGATAAACGGTGATACTGTGGTGATTCTGCTTTCCGTATTTCTCTTTGATGTTAACCCT
GCTGTTTGTATTACCAGCGTGCATGGAGGAGAGTTCAGTAGAGCTAGGTGTTTCAGTTCA
AATACTAACACAGCATTGCCATTCCAGAATTTACCACGTGTGTTGATTTTCCTCTTGTTT
TATTTAAAATAAAAATGTTTGGGTATTACCTTGTGACAGTCCCTGCAAACAGGACAAGCC
ATTAGGGTGTATTTCCCAGATTTCCACTTGAGAACCCAAACTAAGGGAAGTGAGATAAAC
GGTCCAGGATCTGCATCCCATCATTAACAGCCATTTTTGATTTTTCTCTCAATCCCTGTG
AGATCCAGCTTCCTTATGTGTAAAATGTGATCAGACTAGGGCAGTGGTTCTCAGAGTGCA
TCCCTGGGGAGTGCTTGAGACCCTTTCAGGGGCTTTCAGGAATAAAGCTATTTTGTCTTA
AGATGACATCATTTGCCTTTTTCATTCTCATTCTTTCCCGAGTGTACAGAGGAGTTTTCC
TGAGGCTGTGTATTGTATGATACTGTAACAGACGGAACACAAAAGCAGAGAGCAGAGAAT
CTAGCTCTCTTCCGTTAAGCTAGACCTGAAAGAAATCTACAAAAATGCAAAACAGTGCCA
CTCTTCTCCCTTTTTTTAAGAAAAATAGCTATTTTTATAAAACTTATG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
153-352, gnl|bosTau2|chr12 (7955504-7955703) |
|
153-352, gnl|canFam2|chr22 (6363185-6362946) |
|
153-352, gnl|danRer3|chr6 (5022349-5022108) |
|
153-352, gnl|dasNov1|scaffold_170828 (3572-3312) |
|
153-352, gnl|echTel1|scaffold_126901 (491-221) |
|
153-352, gnl|fr1|chrUn (127979113-127979360) |
|
153-352, gnl|hg17|chr13 (47513018-47513284) |
|
153-352, gnl|Hg17|chr13 (47513056-47513255) |
|
153-352, gnl|loxAfr1|scaffold_87289 (7392-7194) |
|
153-352, gnl|mm7|chr14 (68205230-68204987) |
|
153-352, gnl|Mm7|chr14 (68205213-68205014) |
|
153-352, gnl|monDom2|scaffold_15 (59183400-59183155) |
|
153-352, gnl|oryCun1|scaffold_119501 (3400-3644) |
|
153-352, gnl|panTro1|chr14_random (13574044-13574278) |
|
153-352, gnl|rheMac2|chr6 (135899604-135899406) |
|
153-352, gnl|rn3|chr15 (54189568-54189325) |
|
153-352, gnl|tetNig1|chr3 (3889639-3889428) |
|
153-352, gnl|xenTro1|scaffold_133 (119432-119697) |
| |
|
1122-1391, gnl|bosTau2|chr11 (30066569-30066303) |
|
1122-1391, gnl|Hg17|chr2 (61120723-61120477) |
| |
|
1158-1385, gnl|bosTau2|chr10 (30564659-30564432) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
153-352, gnl|bosTau2|chr12 (7955504-7955703) |
|
153-352, gnl|canFam2|chr22 (6363185-6362946) |
|
153-352, gnl|danRer3|chr6 (5022349-5022108) |
|
153-352, gnl|dasNov1|scaffold_170828 (3572-3312) |
|
153-352, gnl|echTel1|scaffold_126901 (491-221) |
|
153-352, gnl|fr1|chrUn (127979113-127979360) |
|
153-352, gnl|hg17|chr13 (47513018-47513284) |
|
153-352, gnl|Hg17|chr13 (47513056-47513255) |
|
153-352, gnl|loxAfr1|scaffold_87289 (7392-7194) |
|
153-352, gnl|mm7|chr14 (68205230-68204987) |
|
153-352, gnl|Mm7|chr14 (68205213-68205014) |
|
153-352, gnl|monDom2|scaffold_15 (59183400-59183155) |
|
153-352, gnl|oryCun1|scaffold_119501 (3400-3644) |
|
153-352, gnl|panTro1|chr14_random (13574044-13574278) |
|
153-352, gnl|rheMac2|chr6 (135899604-135899406) |
|
153-352, gnl|rn3|chr15 (54189568-54189325) |
|
153-352, gnl|tetNig1|chr3 (3889639-3889428) |
|
153-352, gnl|xenTro1|scaffold_133 (119432-119697) |
| |
|
1122-1391, gnl|bosTau2|chr11 (30066569-30066303) |
|
1122-1391, gnl|Hg17|chr2 (61120723-61120477) |
| |
|
1158-1385, gnl|bosTau2|chr10 (30564659-30564432) |
|
spl (0.286369) |
|
kid (0.259471) |
|
fcc (0.197785) |
|
duo (0.172801) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
tbr (0.154178) |
|
ski (0.146735) |
|
lin (0.145603) |
|
hlv (0.139256) |
|
ssp (0.13552) |
|
ret (0.128733) |
|
sug (0.127291) |
|
thg (0.126791) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
|
spl (0.286369) |
|
kid (0.259471) |
|
fcc (0.197785) |
|
duo (0.172801) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
tbr (0.154178) |
|
ski (0.146735) |
|
lin (0.145603) |
|
hlv (0.139256) |
|
ssp (0.13552) |
|
ret (0.128733) |
|
sug (0.127291) |
|
thg (0.126791) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
