Ss1.1-rspc018_h23.5
|
CGGAGGCGGAGGCTCGGGTGTGCTCAAGATTCGGTTCTACCCGTAACCCACCGCCATGGC
CGAGGAAGGCATTGCTGCTGGAGGTGTAATGGACGTTAATACTGCTCTACAAGAGGTGCT
GAAGACCGCCCTCATCCATGATGGCCTAGCACGTGGAATTCGCGAAGCTGCCAAAGCCTT
AGACAAGTACGTGTATCAGTCTCAATACTGTGGGGTGTTGGATCTGGAACAAAACTGCAG
CCAAGGGAAGAGAGCGTGAAGTTCATGCTGTTAGCACAAAAGTTGTGAATGGCATCCGTT
CTACAGGAAACCTAGGAAAAGGCGCCAAGCCCATCTTTGTGTGCTTGCATCCAACTGTGA
TGAGCCAATGTATGTCAAGTTGGTGGAGGCCCTTTGTGCTGAGCACCAGATCAACCTAAT
TAAGGTCGACGACAACAAGAAACTAGGGGAATGGGTAGGCCTCTGTAAAATTGACAGAGA
GGGAAAACCCCGTAAAGTGGTTGGTTGCAGTTGTGTGGTGGTGAAGGACTATGGCAAAGA
GTCTCAGGCCAAGGATGTCATCGAGGAGTACTTCAAATGCAAGAAATAATCAAATAAAAA
GACTGGCTCCTAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGGAGGCGGAGGCTCGGGTGTGCTCAAGATTCGGTTCTACCCGTAACCCACCGCCATGGC
CGAGGAAGGCATTGCTGCTGGAGGTGTAATGGACGTTAATACTGCTCTACAAGAGGTGCT
GAAGACCGCCCTCATCCATGATGGCCTAGCACGTGGAATTCGCGAAGCTGCCAAAGCCTT
AGACAAGTACGTGTATCAGTCTCAATACTGTGGGGTGTTGGATCTGGAACAAAACTGCAG
CCAAGGGAAGAGAGCGTGAAGTTCATGCTGTTAGCACAAAAGTTGTGAATGGCATCCGTT
CTACAGGAAACCTAGGAAAAGGCGCCAAGCCCATCTTTGTGTGCTTGCATCCAACTGTGA
TGAGCCAATGTATGTCAAGTTGGTGGAGGCCCTTTGTGCTGAGCACCAGATCAACCTAAT
TAAGGTCGACGACAACAAGAAACTAGGGGAATGGGTAGGCCTCTGTAAAATTGACAGAGA
GGGAAAACCCCGTAAAGTGGTTGGTTGCAGTTGTGTGGTGGTGAAGGACTATGGCAAAGA
GTCTCAGGCCAAGGATGTCATCGAGGAGTACTTCAAATGCAAGAAATAATCAAATAAAAA
GACTGGCTCCTAAAAAAAAAAAAA
|
|
gi|34849622|gb|AAH58460.1| |
Protein identifier
|
gi|34849622|gb|AAH58460.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
3-190, gnl|bosTau2|chr8 (52608253-52608063) |
|
3-190, gnl|Hg17|chr11 (74134860-74134673) |
|
3-190, gnl|Mm7|chr7 (52256456-52256643) |
| |
|
38-188, gnl|bosTau2|chr11 (25805964-25805814) |
|
38-188, gnl|Hg17|chr13 (20566870-20566721) |
|
38-188, gnl|Mm7|chr7 (27204749-27204899) |
| |
|
317-624, gnl|bosTau2|chr13 (31610358-31610056) |
|
317-624, gnl|canFam2|chr15 (13927763-13927350) |
|
317-624, gnl|dasNov1|scaffold_41237 (8000-7605) |
|
317-624, gnl|echTel1|scaffold_164599 (6069-6475) |
|
317-624, gnl|hg17|chr12 (131539156-131539529) |
|
317-624, gnl|Hg17|chr13 (36693264-36692963) |
|
317-624, gnl|loxAfr1|scaffold_113129 (4304-4704) |
|
317-624, gnl|Mm7|chr7 (52256635-52256930) |
|
317-624, gnl|oryCun1|scaffold_96663 (1231-1610) |
|
317-624, gnl|panTro1|chrUn_random (2213092-2212720) |
|
317-624, gnl|rheMac2|chr11 (133669269-133669635) |
|
317-624, gnl|rn3|chr3 (117807383-117807784) |
| |
|
445-609, gnl|bosTau2|chr11 (25801764-25801600) |
|
445-609, gnl|Hg17|chr13 (20566598-20566441) |
|
445-609, gnl|Mm7|chr7 (27205021-27205160) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-190, gnl|bosTau2|chr8 (52608253-52608063) |
|
3-190, gnl|Hg17|chr11 (74134860-74134673) |
|
3-190, gnl|Mm7|chr7 (52256456-52256643) |
| |
|
38-188, gnl|bosTau2|chr11 (25805964-25805814) |
|
38-188, gnl|Hg17|chr13 (20566870-20566721) |
|
38-188, gnl|Mm7|chr7 (27204749-27204899) |
| |
|
317-624, gnl|bosTau2|chr13 (31610358-31610056) |
|
317-624, gnl|canFam2|chr15 (13927763-13927350) |
|
317-624, gnl|dasNov1|scaffold_41237 (8000-7605) |
|
317-624, gnl|echTel1|scaffold_164599 (6069-6475) |
|
317-624, gnl|hg17|chr12 (131539156-131539529) |
|
317-624, gnl|Hg17|chr13 (36693264-36692963) |
|
317-624, gnl|loxAfr1|scaffold_113129 (4304-4704) |
|
317-624, gnl|Mm7|chr7 (52256635-52256930) |
|
317-624, gnl|oryCun1|scaffold_96663 (1231-1610) |
|
317-624, gnl|panTro1|chrUn_random (2213092-2212720) |
|
317-624, gnl|rheMac2|chr11 (133669269-133669635) |
|
317-624, gnl|rn3|chr3 (117807383-117807784) |
| |
|
445-609, gnl|bosTau2|chr11 (25801764-25801600) |
|
445-609, gnl|Hg17|chr13 (20566598-20566441) |
|
445-609, gnl|Mm7|chr7 (27205021-27205160) |
|
spc (0.453463) |
|
elu (0.385356) |
|
gul (0.355177) |
|
cut (0.339847) |
|
cte (0.29274) |
|
thg (0.253582) |
|
pan (0.23596) |
|
tes (0.207814) |
|
aor (0.195274) |
|
nlu (0.191681) |
|
cmu (0.186393) |
|
nep (0.183925) |
|
fty (0.17584) |
|
sin (0.174948) |
|
rec (0.17307) |
|
cje (0.165235) |
|
cki (0.165235) |
|
lun (0.150489) |
|
bfe (0.149858) |
|
ski (0.146735) |
|
hyp (0.142837) |
|
csk (0.140746) |
|
nca (0.136874) |
|
ssp (0.13552) |
|
ste (0.135208) |
|
cov (0.132153) |
|
sug (0.127291) |
|
ese (0.126502) |
|
eru (0.120048) |
|
ecc (0.115035) |
|
jej (0.0989218) |
|
spc (0.453463) |
|
elu (0.385356) |
|
gul (0.355177) |
|
cut (0.339847) |
|
cte (0.29274) |
|
thg (0.253582) |
|
pan (0.23596) |
|
tes (0.207814) |
|
aor (0.195274) |
|
nlu (0.191681) |
|
cmu (0.186393) |
|
nep (0.183925) |
|
fty (0.17584) |
|
sin (0.174948) |
|
rec (0.17307) |
|
cje (0.165235) |
|
cki (0.165235) |
|
lun (0.150489) |
|
bfe (0.149858) |
|
ski (0.146735) |
|
hyp (0.142837) |
|
csk (0.140746) |
|
nca (0.136874) |
|
ssp (0.13552) |
|
ste (0.135208) |
|
cov (0.132153) |
|
sug (0.127291) |
|
ese (0.126502) |
|
eru (0.120048) |
|
ecc (0.115035) |
|
jej (0.0989218) |
