Non-Coding RNA Search

Ss1.1-rtes01_j19.5

Sequence:


               
               AACACCTGCACTCCCCTGACCAAGTCAGAAAGGAGATGGGGGCAAGTGAAAGATGATTCT
AGATGTAGACGTTAGCTTTTTGTAAATATCATAACTGGTGGCTGTGAAGTAGAAAATAAG
TATAGTTATATACTTGTTCTATAAATTGTTAACCTTTAAAAATATAATTGCTGCTAAAAA
TAAGAGTGCTGTTACACTTAAAATTGGTGCCACTGTTTTGAAAATGAGATCTTGTGCCAT
AAATGCAGCTGAACTAAATACAATCATTAGTTCACAAATTAATGCTGTCAGAGGAATGAG
TAAAGTAGGAAAACTTTTAACCAGTGACATTTCATTCTAAATTATGTAGTGTGAGCAAAC
ATGATCCTCCAGAATTTTTGTATTTTTCTTGATACAGAGGTTAGGTGTTTTCTGGGTGTA
TTTTTAAAAATGGAAACATTTTAAATCCCACAGATGGAGACACTTTGTATCAATCTTAAA
TGGACTAAGTTTTTTTTTTTTTCTCAGTAATCTCTGAAGTTTCTTTAAATTATATTTAAC
ACAGCAGAGAAACTGGATTGTTTTTGTATATAAGACTGTGTCCACCTGAAATGTTGTCAG
AAGTACTAGGGGGGCTGGGTATCTTGTACATGATATTCTTAGAGGTAATAATGCATGGAC
TTATTTTATAAATTCTTGGACTATGTATTTGACATGTAAAATATGTACAGTATTAATGTC
AGCCATTTCTTAAAAGTGAGCCTATAAATATTGTTGTATAATTTTCTTCGGTCAGAAGCA
TTTGGACTAAGTAGTACCACTGGGTCAGGATTTTCTTCAGTGCCATTTAGCAAACCACCT
GTCTTTAGGCAACTAGCAAAAATTTGTATAATGCATCAGAATACTTCAGTTGTCACACTT
TAACTTTCACATGTTCTTCACTATATTTTTGGAACCCAGCCTAGTAAAATTAGAGGAAAG
GCCCCAAGGAGACTTAATTCTGTTAAGAGAAAAAGGCCTACATTTGCAAGCTCAACAAGT
CAATCTACTATAGATAACAAATAGTGTCTACTGTCACAACCCTCCAAAGTTTACAGTGTT
GGGACTGTCATTTGTGCTTTCTGTGGGATAGTTGGATAAAATCGGGCAGCTAAAATTTCA
AGTCCCCTGTGCCTCCTAAATTTAAAGTTTGTAAATTGACTCACAGACACAAAGTAGCAA
CTATTTTGCATGTTTATTGTCAGGTGTTTTTTTTTGTTTCTGTAAACAGGTGAAATTTTC
CAACCAGGCACATCCCATTCAATTTTCTGTCAATCACACAGTTGTATAAAGCAGCAAAAC
TGAAGGGGGAGTGATTGTTGTATACACTTCAAATTGCTTTGCATGGTCTCGTTTGAGATA
ATTGGTGTAAGAATCTTGACTCTTTTTTACATTTGGAAACATCAAATAAAAAATGGAAAT
GGGAAAAAAAAAAAAAAAAAAAAAAAATACAGTTTATTTACAATGTATTTCTGCTGCACA
GCAAAGTGATTCAGCTATACATACTTATATTATGGCTTAAAGTATTTAAGAGAGTCCCCT
GTGCTATACAGTAGGACCTCGTTTATCCATTCTGTAGATAATAGTGTGCACCTGCTAACC
CCAAACCCCCAGTCCCTCCCTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACACCTGCACTCCCCTGACCAAGTCAGAAAGGAGATGGGGGCAAGTGAAAGATGATTCT
AGATGTAGACGTTAGCTTTTTGTAAATATCATAACTGGTGGCTGTGAAGTAGAAAATAAG
TATAGTTATATACTTGTTCTATAAATTGTTAACCTTTAAAAATATAATTGCTGCTAAAAA
TAAGAGTGCTGTTACACTTAAAATTGGTGCCACTGTTTTGAAAATGAGATCTTGTGCCAT
AAATGCAGCTGAACTAAATACAATCATTAGTTCACAAATTAATGCTGTCAGAGGAATGAG
TAAAGTAGGAAAACTTTTAACCAGTGACATTTCATTCTAAATTATGTAGTGTGAGCAAAC
ATGATCCTCCAGAATTTTTGTATTTTTCTTGATACAGAGGTTAGGTGTTTTCTGGGTGTA
TTTTTAAAAATGGAAACATTTTAAATCCCACAGATGGAGACACTTTGTATCAATCTTAAA
TGGACTAAGTTTTTTTTTTTTTCTCAGTAATCTCTGAAGTTTCTTTAAATTATATTTAAC
ACAGCAGAGAAACTGGATTGTTTTTGTATATAAGACTGTGTCCACCTGAAATGTTGTCAG
AAGTACTAGGGGGGCTGGGTATCTTGTACATGATATTCTTAGAGGTAATAATGCATGGAC
TTATTTTATAAATTCTTGGACTATGTATTTGACATGTAAAATATGTACAGTATTAATGTC
AGCCATTTCTTAAAAGTGAGCCTATAAATATTGTTGTATAATTTTCTTCGGTCAGAAGCA
TTTGGACTAAGTAGTACCACTGGGTCAGGATTTTCTTCAGTGCCATTTAGCAAACCACCT
GTCTTTAGGCAACTAGCAAAAATTTGTATAATGCATCAGAATACTTCAGTTGTCACACTT
TAACTTTCACATGTTCTTCACTATATTTTTGGAACCCAGCCTAGTAAAATTAGAGGAAAG
GCCCCAAGGAGACTTAATTCTGTTAAGAGAAAAAGGCCTACATTTGCAAGCTCAACAAGT
CAATCTACTATAGATAACAAATAGTGTCTACTGTCACAACCCTCCAAAGTTTACAGTGTT
GGGACTGTCATTTGTGCTTTCTGTGGGATAGTTGGATAAAATCGGGCAGCTAAAATTTCA
AGTCCCCTGTGCCTCCTAAATTTAAAGTTTGTAAATTGACTCACAGACACAAAGTAGCAA
CTATTTTGCATGTTTATTGTCAGGTGTTTTTTTTTGTTTCTGTAAACAGGTGAAATTTTC
CAACCAGGCACATCCCATTCAATTTTCTGTCAATCACACAGTTGTATAAAGCAGCAAAAC
TGAAGGGGGAGTGATTGTTGTATACACTTCAAATTGCTTTGCATGGTCTCGTTTGAGATA
ATTGGTGTAAGAATCTTGACTCTTTTTTACATTTGGAAACATCAAATAAAAAATGGAAAT
GGGAAAAAAAAAAAAAAAAAAAAAAAATACAGTTTATTTACAATGTATTTCTGCTGCACA
GCAAAGTGATTCAGCTATACATACTTATATTATGGCTTAAAGTATTTAAGAGAGTCCCCT
GTGCTATACAGTAGGACCTCGTTTATCCATTCTGTAGATAATAGTGTGCACCTGCTAACC
CCAAACCCCCAGTCCCTCCCTCCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               230-349, - strand, RNAz p=0.551742

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               230-349, - strand, RNAz p=0.551742

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               6-469, gnl|bosTau2|chr5 (15562666-15562203)
               

               
               6-469, gnl|Hg17|chr12 (92296779-92297557)
               

               
               6-469, gnl|Mm7|chr10 (95109234-95108842)
               


               
               490-1456, gnl|bosTau2|chr17 (6861650-6860684)
               

               
               490-1456, gnl|Hg17|chr1 (142626138-142625162)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-469, gnl|bosTau2|chr5 (15562666-15562203)
               

               
               6-469, gnl|Hg17|chr12 (92296779-92297557)
               

               
               6-469, gnl|Mm7|chr10 (95109234-95108842)
               


               
               490-1456, gnl|bosTau2|chr17 (6861650-6860684)
               

               
               490-1456, gnl|Hg17|chr1 (142626138-142625162)

Expressed library(ies): 28 entry(ies)

More info

Expressed library(ies): 28 entry(ies)

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               tes (0.623441)
               

               
               amn (0.417711)
               

               
               ret (0.3862)
               

               
               sag (0.36543)
               

               
               gul (0.355177)
               

               
               mga (0.32041)
               

               
               tbr (0.308356)
               

               
               lin (0.291206)
               

               
               nca (0.273748)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 28 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.623441)
               

               
               amn (0.417711)
               

               
               ret (0.3862)
               

               
               sag (0.36543)
               

               
               gul (0.355177)
               

               
               mga (0.32041)
               

               
               tbr (0.308356)
               

               
               lin (0.291206)
               

               
               nca (0.273748)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	6-469, gnl\|bosTau2\|chr5 (15562666-15562203)
	6-469, gnl\|Hg17\|chr12 (92296779-92297557)
	6-469, gnl\|Mm7\|chr10 (95109234-95108842)

	490-1456, gnl\|bosTau2\|chr17 (6861650-6860684)
	490-1456, gnl\|Hg17\|chr1 (142626138-142625162)

	tes (0.623441)
	amn (0.417711)
	ret (0.3862)
	sag (0.36543)
	gul (0.355177)
	mga (0.32041)
	tbr (0.308356)
	lin (0.291206)
	nca (0.273748)
	thg (0.253582)
	tra (0.246184)
	pgl (0.236967)
	mgp (0.230681)
	ece (0.229305)
	nms (0.213858)
	fcc (0.197785)
	fty (0.17584)
	eli (0.151814)
	spl (0.143184)
	hyp (0.142837)
	hlv (0.139256)
	kid (0.129735)
	sug (0.127291)
	bla (0.124347)
	cty (0.10408)
	nbm (0.0993246)
	jej (0.0989218)
	eje (0.0988338)