Non-Coding RNA Search

rspl04_e9.y1

Sequence:


               
               CAAAAAAATATTGACTATCAAGAGGGATTATGACTGTAAGGACATTAAAAAAATAATTCA
AGTGAGCCAGAACATTCCTTCTCCAAAGAAACCCCATCAATGTGACTTATTTGGAAATGC
TTTGAAGCATAATTTAGATTTACACAGTCATAACAGGAACAGTGGATCAAAGAACATTAA
TAAGATTACAGAATATGGTAAAATTTCTTCCTATACTGAACATGAGTATACTCCAACAAG
AGAGAAATTTTGGGACCATAATCAATGTGGAAAAATCCTCAGCTATAAACAAGCACCCTC
TCAACATCAGAAAATTTATACTGGGGAGAAATCTTATGAGTGTGCTGAATTTGGAAATAT
CTTCACCCAGAAGTCACAACTCAAGGTACATTTGAAGGTTCATACAGGAGAAAAACTCTA
TGTATGTATTGACTGTGGGAAGGCATTTGTACAGAAACCAGAATTCATTACACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAAAAATATTGACTATCAAGAGGGATTATGACTGTAAGGACATTAAAAAAATAATTCA
AGTGAGCCAGAACATTCCTTCTCCAAAGAAACCCCATCAATGTGACTTATTTGGAAATGC
TTTGAAGCATAATTTAGATTTACACAGTCATAACAGGAACAGTGGATCAAAGAACATTAA
TAAGATTACAGAATATGGTAAAATTTCTTCCTATACTGAACATGAGTATACTCCAACAAG
AGAGAAATTTTGGGACCATAATCAATGTGGAAAAATCCTCAGCTATAAACAAGCACCCTC
TCAACATCAGAAAATTTATACTGGGGAGAAATCTTATGAGTGTGCTGAATTTGGAAATAT
CTTCACCCAGAAGTCACAACTCAAGGTACATTTGAAGGTTCATACAGGAGAAAAACTCTA
TGTATGTATTGACTGTGGGAAGGCATTTGTACAGAAACCAGAATTCATTACACAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               154-313, - strand, RNAz p=0.973937

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               154-313, - strand, RNAz p=0.973937

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               177-301, - strand, RNAmicro p=0.94282

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               177-301, - strand, RNAmicro p=0.94282

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-475, gnl|bosTau2|chr18 (42790639-42791116)
               

               
               1-475, gnl|Mm7|chr7 (26839089-26838612)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-475, gnl|bosTau2|chr18 (42790639-42791116)
               

               
               1-475, gnl|Mm7|chr7 (26839089-26838612)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	1-475, gnl\|bosTau2\|chr18 (42790639-42791116)
	1-475, gnl\|Mm7\|chr7 (26839089-26838612)