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High confidence novel cis-acting RNAs
Conread name
Conread start
Conread end
RNAz p-value
Ss1.1-Pig4-TMW8056I07.5.5
2071
2954
0.999631
Ss1.1-Pig4-TMW8058M17.3
2040
2314
0.992706
Ss1.1-rfat0137_b16.5
2036
2195
0.976327
Ss1.1-Pig4-TMW8061F21.3
1759
2069
0.999992
Ss1.1-Pig4-TMW8031E05.3
1884
1978
0.996873
Ss1.1-Liv1-LVR01F060090.5
1130
1959
0.996616
Ss1.1-Pig4-TMW8041N05.3
1800
1957
0.973421
Ss1.1-Pig4-TMW8049J11.3.5
1713
1906
0.999953
Ss1.1-Pig3-SRG8014N02.5
1604
1831
0.994016
Ss1.1-Pig4-TMW8023N18.3
1473
1830
0.999442
Ss1.1-Liv1-LVR010047E02.5
1664
1811
0.967675
Ss1.1-uFN-UNL-P-FN-bi-h-12-0-UNL.s1.3
286
1766
0.995639
Ss1.1-Pig4-TMW8038N13.3
1481
1740
0.997429
Ss1.1-Ova1-OVR010040C06.5
1581
1699
0.998579
Ss1.1-Pig4-TMW8048E17.5
935
1651
0.999903
Ss1.1-Pig4-TMW8051H11.3
1531
1643
0.990313
Ss1.1-Pig4-TMW8041E09.3
1496
1620
0.999953
Ss1.1-Pig4-TMW8026P19.5
1484
1603
0.994286
Ss1.1-Tra1-TCH01E050046.5
2
1563
0.999546
Ss1.1-Pig4-TMW8043I03.5
1380
1535
0.994787
Ss1.1-Pig1-100O23.5.5
1261
1511
0.998766
Ss1.1-Pig4-TMW8035K12.3
1380
1492
0.998373
Ss1.1-Pig4-TMW8068M18.3
1269
1488
0.998374
Ss1.1-Pig4-TMW8035M06.3
1325
1484
0.93235
Ss1.1-Pig4-TMW8068A15.3
1024
1474
0.999479
Ss1.1-Pey1-38C02.5
1043
1470
0.99996
Ss1.1-Pig4-TMW8058M17.3
1325
1463
0.993983
Ss1.1-ramn3511b_o8.5
1236
1453
0.999772
Ss1.1-Pig4-TMW8053P24.5.5
1230
1431
0.999758
Ss1.1-Lym1-jns41_A06.f.5
1179
1412
0.985298
Ss1.1-uFN-UNL-P-FN-cq-a-09-0-UNL.s1.3
1067
1402
0.99982
Ss1.1-Mixc-0040,i12.5
1240
1399
0.968524
Ss1.1-Tra1-TCH01E070067.5
1215
1389
0.998796
Ss1.1-Utr1-UTR01A110101.5
1102
1335
0.994316
Ss1.1-Thy1-THY010087A06.5
1211
1330
0.986294
Ss1.1-LyN1-MLN01C010094.5.5
1156
1315
0.996876
Ss1.1-Pig4-TMW8016O05.5
1158
1292
0.988602
Ss1.1-rpldo0111_n22.5
1110
1252
0.996669
Ss1.1-Ova1-OVR010004E02.5
974
1248
0.995721
Ss1.1-Pig4-TMW8024N15.3
1127
1246
0.998673
Ss1.1-Pig4-TMW8048P08.3
1059
1236
0.993259
Ss1.1-Pig4-TMW8045H16.3
1037
1235
0.985563
Ss1.1-Pig4-TMW8068K01.3
988
1226
0.995657
Ss1.1-Emb1-C0005191_H03.5
986
1212
1
Ss1.1-Pig4-TMW8058N20.3.5
894
1209
0.997978
Ss1.1-Utr2-C0001800_N09.5
903
1176
0.996016
Ss1.1-Pig4-TMW8059E23.3
739
1155
0.999827
Ss1.1-rpigcb_12557.5
813
1154
0.997626
Ss1.1-Mixc-0030,f09.3
938
1137
0.988831
Ss1.1-Tes1-TES01H010046.5
794
1122
0.994106
Ss1.1-Pig4-TMW8055N01.5
924
1078
0.998235
Ss1.1-Pig4-TMW8038K20.3
858
1074
0.992346
Ss1.1-rpldo0136_c19.5
895
1056
0.970423
Ss1.1-Pig4-TMW8044K21.5
873
1042
0.976111
Ss1.1-Pig4-TMW8004H13.3
906
1024
0.965238
Ss1.1-Utr1-UTR010046E03.5
837
1020
0.987675
Ss1.1-Pig4-TMW8044F06.3
654
1010
0.994999
Ss1.1-Pig4-TMW8025F08.3
870
1006
0.997243
Ss1.1-Pig4-TMW8014O11.3
876
1001
0.999227
Ss1.1-Lng1-LNG010036B07.5
883
1000
0.9956
Ss1.1-Mixn-0003h01.5
720
999
0.993598
Ss1.1-Pig4-TMW8026K11.3
882
996
0.996248
Ss1.1-rcli35b_b16.5
839
995
0.999999
Ss1.1-Pig4-TMW8052O12.5
795
994
0.997299
Ss1.1-Pig4-TMW8055D13.3
593
978
0.99821
Ss1.1-Spl1-SPL010026E11.5
849
967
0.950662
Ss1.1-Mixn-0035j01.5
404
948
0.991331
Ss1.1-Pig4-TMW8045L10.3
784
940
0.905032
Ss1.1-Ova1-OVR010032H05.5
720
939
0.999831
Ss1.1-Pig4-TMW8036M06.3
819
938
0.999171
Ss1.1-Pig4-TMW8063J16.5
646
920
0.974914
Ss1.1-Pig3-SRG8016N06.3
743
898
0.992987
Ss1.1-Mixn-0030f20.5
621
898
0.999704
Ss1.1-rtra17_c14.5
737
896
0.998026
Ss1.1-Pig4-TMW8045M20.3
694
889
0.999698
Ss1.1-Pig4-TMW8064A15.3
594
888
0.999566
Ss1.1-rton1209b_g9.5
656
884
0.999999
Ss1.1-Pig2-67K15.5
645
880
0.999968
Ss1.1-LyN1-MLN01F080079.5
733
879
0.991109
Ss1.1-Pig4-TMW8037I24.3
584
866
0.996904
Ss1.1-rnca24b_d7.5
630
865
0.99998
Ss1.1-Pig4-TMW8067B16.3
650
846
0.989892
Ss1.1-Pig2-109N11.5
419
840
0.999842
Ss1.1-Utr1-UTR010034H09.5
397
832
0.990122
Ss1.1-Pig4-TMW8023J16.3.5
680
830
0.999881
Ss1.1-Pig4-TMW8031D12.5
713
825
0.902702
Ss1.1-Pig3-SRG8023K01.3
663
822
0.996718
Ss1.1-Mixc-0029d12.5
269
819
0.99827
Ss1.1-Pig4-TMW8054G18.3
628
808
0.999997
Ss1.1-rfat0123_o24.5
686
801
0.989761
Ss1.1-LyN1-MLN01B100062.5
660
796
0.999946
Ss1.1-Pig2-108K16.5
596
792
0.997452
Ss1.1-Lng1-LNG010106C01.5
527
792
0.998777
Ss1.1-rpliv0123_e17.5
585
783
0.999731
Ss1.1-unkn-MI-P-NA-aen-g-10-1-UM.s1.3
272
776
0.990667
Ss1.1-Utr2-C0001808_E04.5
459
768
0.999274
Ss1.1-reep33c_d15.5
528
766
0.999479
Ss1.1-Pig4-TMW8032A13.5
591
759
0.989981
Ss1.1-rebs23c_p20.5
521
751
0.9993
Ss1.1-Emb1-C0005181_M09.5
354
741
0.999358
Ss1.1-Spl1-SPL010019F01.5
229
738
0.999771
Ss1.1-rpgl20_l8.5
40
736
0.997844
Ss1.1-rjca01c_a6.5
575
734
0.999999
Ss1.1-End1-UMC-pd3end1-001-d04.3
482
725
0.99318
Ss1.1-rspl26_n23.5
524
723
0.99567
Ss1.1-Lng1-LNG010010A08.5
564
721
0.968108
Ss1.1-rlin06_b13.5
613
720
0.99987
Ss1.1-Tra1-TCH01B050048.5
520
719
0.99474
Ss1.1-Emb1-C0005193_M01.5
513
712
0.999033
Ss1.1-Lng1-LNG010106C01.5
199
709
0.996077
Ss1.1-Pig4-TMW8055C23.3.5
493
709
0.994948
Ss1.1-rfhi4004b_e1.5
162
707
0.999867
Ss1.1-Pig3-SRG8010B07.5
458
695
0.990978
Ss1.1-uFN-UNL-P-FN-dg-d-08-0-UNL.s1.3
93
691
0.990132
Ss1.1-Pig1-81B15.5
316
689
0.994241
Ss1.1-rcmu32_i23.5
449
684
0.98842
Ss1.1-rfat0122_i12.5
517
673
0.980503
Ss1.1-rcad35b_b24.5
174
659
0.999999
Ss1.1-rpliv0107_d5.5
503
658
0.991351
Ss1.1-Mixn-0030m20.5
81
657
0.996561
Ss1.1-Mixc-0035e06.3
552
645
0.935413
Ss1.1-Pig4-TMW8012P05.3
1
633
0.999948
Ss1.1-Pig4-TMW8053O11.3
399
629
0.998642
Ss1.1-Mixc-0028,n22.3
1
620
0.998173
Ss1.1-Pig4-TMW8061C01.5
459
617
0.985874
Ss1.1-rhyp31c_m4.5
209
615
0.999868
Ss1.1-Pig4-TMW8042N04.3
492
605
0.999914
Ss1.1-rpigca_0626.5
369
601
0.998493
Mixn-0006e07
400
598
0.999946
Ss1.1-rpigcb_4104.5
366
573
0.999895
Ss1.1-Pla1-C0000039_P09.5
147
573
0.968952
Ss1.1-reru01c_m12.5
381
569
0.986194
Ss1.1-Pig4-TMW8040A07.3
1
569
0.9996
Pig1-82C01
364
563
0.999824
Ss1.1-Pig1-129I20.5
329
559
0.99969
Ss1.1-rcbl0_003610.5
403
557
0.968812
Ss1.1-rche13_m15.5
444
552
0.996847
Ss1.1-Pig1-44M16.5
187
552
0.997795
Ss1.1-Pig4-TMW8058N07.3
341
546
0.957891
Ss1.1-Liv1-LVRM1D010093.5
383
541
0.997566
Ss1.1-reru26c_g16.5
80
540
0.998556
Liv1-LVRM10162A11
363
539
0.999924
Ss1.1-Lym1-jns77_D08.f.5
348
536
0.998398
Ss1.1-Ova2-C0003263_I14.5
359
532
0.971614
Ss1.1-Pig4-TMW8053N08.3
80
528
0.997185
Ss1.1-Mixn-0003e12.5
374
528
0.999384
Ss1.1-Mixc-0029,a17.3
406
523
0.993993
Pig1-89N05
313
523
0.986928
Mixc-0032m16
323
522
0.989231
Ss1.1-Pig4-TMW8012M06.3
332
521
0.995674
Ss1.1-rret15_c23.5
200
519
0.998653
Ss1.1-Mixn-0008l23.5
358
517
0.951471
Ss1.1-Mixc-0026,m17.5
316
514
0.99692
Ss1.1-Bra1-PBL_2_E12.5
391
514
0.9987
Ss1.1-rpfco0139_l19.5
371
511
0.980073
Ss1.1-Pig3-SRG8024I19.3
80
507
0.99857
Ss1.1-Pig4-TMW8055P22.3
359
501
0.999866
Ss1.1-Mixn-0031m04.5
211
497
0.999485
Ss1.1-rlin19_d17.5
377
495
0.998015
Ss1.1-Mixc-0025g18.3
297
492
0.999994
Ss1.1-Mixc-0031,h18.3
334
490
0.995322
Ss1.1-rnco1922b_g5.5
82
488
0.999994
Ss1.1-Pla1-C0000027_P11.5
1
480
0.999335
Ss1.1-Mixn-0039l11.5
86
472
0.99852
Ss1.1-Pig4-TMW8049K19.5
195
470
0.907006
Ss1.1-rfbs3919b_k4.5
266
467
0.998405
Pig1-72H06
308
465
0.99396
Ss1.1-reep03c_j9.5
347
464
0.999346
Ss1.1-Pig4-TMW8026A18.3
349
462
0.993482
Ss1.1-rmcp28c_b13.5
263
462
0.995591
Ss1.1-ruio02_c18.5
185
460
0.986862
Ss1.1-Pla1-C0000039_L14.5
71
460
0.9958
Ss1.1-Pig1-51L19.5
340
456
0.998334
Mixc-0034h13
328
455
0.925668
Ss1.1-Pig4-TMW8030O18.5
338
454
0.987972
Ss1.1-raor023_a14.5
326
445
0.955463
reru28c_c21.y1
92
440
0.999374
Pig2-68F18
1
437
0.997356
Ss1.1-reje19b_d2.5
201
433
0.999432
Ova2-C0003273_P22
292
432
0.999936
Ss1.1-Mixg-0006g12.3
1
429
0.999832
Ss1.1-Pla1-C0000936_H08.5
230
429
0.994705
Ss1.1-Emb1-C0005217_P07.5
79
427
0.999628
Ss1.1-rpgl08_i17.5
314
427
0.999127
Ss1.1-rpigca0_003172.5
249
426
0.999349
Ss1.1-Pig1-132M08.5
269
423
0.999157
Ss1.1-rebs17c_k21.5
1
418
0.999879
Pig2-42L02
287
416
0.999987
MPL-MPL384_11_P05
219
414
0.99913
Ss1.1-rfcc14b_k24.5
60
413
0.994632
Lym1-jns81_G03.f
9
411
0.999358
Pig1-2J21
1
404
0.999796
unkn-MI-P-NA-afs-g-08-1-UM.s1
282
398
0.99326
Ss1.1-Emb1-C0005188_C01.5
199
397
0.983725
Ss1.1-rfcc29b_i2.5
229
396
0.99744
Ss1.1-Pig2-124P21.5.5
121
394
0.998098
Ss1.1-Pig2-109F18.5
39
392
0.99971
Ss1.1-rcov33b_e4.5
194
391
0.997945
Ss1.1-Pig2-109B10.5
155
383
0.999065
Ss1.1-Pig4-TMW8038D09.3
74
380
0.990438
Ss1.1-rese30c_o19.5
155
377
0.999939
Ss1.1-Pig4-TMW8054G04.5
251
370
0.994089
Ss1.1-Pig4-TMW8036D10.3
260
366
0.99907
Ss1.1-Pla1-C0000037_M12.5
159
357
0.996098
Mixn-0012c11
234
352
0.991671
Ss1.1-Pig1-94A10.5
232
349
0.999447
rfcc13b_p12.y1
206
347
0.998332
Ss1.1-Lym1-jns70_A08.f.5
193
345
0.999983
Ss1.1-reep33c_c6.5
184
343
0.984945
Ss1.1-Pig4-TMW8022J05.3
220
339
0.996463
Ss1.1-4cip-UMC-p4civp1-004-c02.3
124
336
0.998304
Ss1.1-Pig4-TMW8039P20.3
160
333
0.979023
Ss1.1-Utr2-C0001815_H24.5
121
324
0.909529
Ss1.1-rpigcb_12261.5
2
320
0.989814
Pig4-TMW8009C09
1
318
0.992794
Ss1.1-rnca11b_l7.5
129
317
0.999973
Ss1.1-Pig3-SRG8017A17.3
1
314
0.999238
Ss1.1-OvF2-UMC-p2mm4-004-h03.3
199
310
0.999737
Ss1.1-Pig3-SRG8017A13.3
119
303
0.999654
Ss1.1-Pig2-53O19.5
38
292
0.999905
Ss1.1-Pig3-SRG8004K18.3
113
287
0.990069
Ss1.1-Ova1-OVRM10199D10.5
109
284
0.998787
Ss1.1-unkn-CTK602768791.R1.5
41
279
0.993816
Ss1.1-Pig4-TMW8011I19.5
118
272
0.999915
Pig2-83J07
86
271
0.999284
uFN-UNL-P-FN-av-a-11-0-UNL.s1
166
270
0.999813
Pig2-116H02
158
270
0.983153
Ss1.1-Pig4-TMW8001B10.5
17
269
0.996848
Ss1.1-rebs25c_f23.5
150
269
0.994019
Pig2-5L20
7
267
0.991929
unkn-AU055656
161
264
0.999928
Ss1.1-Pig3-SRG8012M16.5
113
253
0.989886
Fat1-C94676
1
245
0.999908
Pig2-32L15
81
240
0.999512
Ss1.1-Pig4-TMW8029C13.3
62
236
0.999943
Ss1.1-Pig4-TMW8059I03.5
117
236
0.993715
Ss1.1-rese12c_n15.5
76
233
0.999991
Ss1.1-Ova2-C0003260_N22.5
1
232
0.996713
Ss1.1-rspc013_f16.5
118
229
0.976196
Ss1.1-rmas913b_e17.5
69
228
0.99998
Ss1.1-Utr1-UTR010061C03.5
41
221
0.96963
Ss1.1-Pey1-24H11.5
107
220
0.999842
Ss1.1-Pig1-132L21.5
40
217
0.999952
Ss1.1-rlnt15c_n2.5
98
215
0.917995
Ss1.1-Mixn-0033o12.5
104
213
0.999649
Ss1.1-rfbs3926b_c4.5
94
210
0.981095
Ss1.1-rrec06_f7.5
54
209
0.999411
Ss1.1-rpigcb_6842.5
2
203
0.984992
rpty619b_d17.y1
98
201
0.99996
Ss1.1-rova002_c2.5
43
198
0.999645
Ss1.1-Mixn-0003l07.5
1
194
0.99616
Ss1.1-rebs35c_l20.5
1
192
0.999999
Ss1.1-rute2106b_l1.5S
1
192
0.999969
Ss1.1-Pig4-TMW8049B11.5
79
189
0.99557
Ss1.1-Pig4-TMW8065O08.3
17
187
0.99092
Ss1.1-rtra21_k10.5
8
184
0.9987
Ss1.1-Ova2-C0003263_M17.5
39
182
0.948961
Ss1.1-Pla1-C0000023_M01.5
39
175
0.992213
reep30c_n9.y1
5
171
0.999823
Ss1.1-Pig1-47M21.5
23
169
0.991974
rpfco0113_j18.y1
4
164
0.980907
Ss1.1-Pig4-TMW8057J10.3
42
161
0.929369
Ss1.1-LyN1-MLN01F060066.5
42
159
0.997287
Ss1.1-Pig3-SRG8002E06.5
1
159
0.995676
Ss1.1-Pig4-TMW8055D13.3
1
158
0.996307
rnmm22c_p20.y1
39
158
0.977651
unkn-SGD602702227.R1
38
155
0.960131
Pig2-44F06
30
155
0.971111
Ss1.1-rtra02_e10.5.5
1
148
0.999979
rnje29c_e16.y1
1
148
0.99872
Ss1.1-Thy1-THY010037B02.5
3
144
0.992559
Ss1.1-Mixn-0032c17.5
41
143
0.998186
Ss1.1-Mixn-0024i17.5
31
126
0.9969
Ss1.1-rmed32c_k10.5
13
124
0.968777
Ova1-OVRM10033C11
1
118
0.949562
Ss1.1-Tes1-TES01G090002.5
3
117
0.999262
Ss1.1-rret37_p2.5
1
117
0.983513
Ss1.1-Mixn-0032i02.5
1
117
0.999069
Ss1.1-rnep31c_n7.5
1
92
0.997133